STAR建索引terminate called after throwing an instance of 'std::bad_alloc
STAR 創建norway spruce的索引的時候，因爲Genome實在是太大，老是出現terminate called after throwing an instance of 'std::bad_alloc'這樣的錯誤，谷歌一下以後把命令改爲了this
STAR --runMode genomeGenerate --runThreadN 20 --genomeFastaFiles Pabies.fa --genomeDir STAR_index --limitGenomeGenerateRAM 80000000000（運行內存加到80G） --genomeChrBinNbits 11（If you are using a genome with a large > 5,000 number of references (chrosomes/scaffolds), you may need to reduce the --{genomeChrBinNbits to reduce RAM consumption. The following scaling is recommended: --genomeChrBinNbits} = min(18, log2(GenomeLength/NumberOfReferences)). For example, for 3~gigaBase genome with 100,000 chromosomes/scaffolds, this is equal to 15），因此挪威雲杉12G的基因組須要log2(120,000,000,000/10,253,694)=11spa
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相關文章
- 1. terminate called after throwing an instance of 'std::bad_alloc'
- 2. 【bug】terminate called after throwing an instance o
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