samtools獲取uniq reads

  • 參考地址:
    https://www.biostars.org/p/56246/
    -q INT only include reads with mapping quality >= INT [0]
    Like for getting the unique reads (a single read mapping at one best position)
    命令以下,也有文獻報告使用的-q 2
samtools view -bq 1 file.bam > unique.bam
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