因爲要是用python 3.6版本的一個包sonicparanoid，可是系統的gcc比較老，因此先用conda建立python環境，在該環境下盡心gcc的安裝和升級python
conda create --name py3.6 python=3.6linux
source activate py3.6c++
conda install pip setuptools cython sh numpy pandas biopython cmakeui
conda install gcc libgcc 而後會提示庫錯誤，須要從新鏈接。spa
首先 rm anaconda2/envs/py3.6/lib/libstdc++.so.6 而後 ln -s anaconda2/envs/py3.6/x86_64-conda_cos6-linux-gnu/sysroot/lib/libstdc++.so.6 . 同時修改環境變量 export LD_LIBRARY_PATH=/lustre/home/luzhiqiang/anaconda2/envs/py3.6/lib:$LD_LIBRARY_PATHip
隨後pandas
pip install sonicparanoidit
最後進入anaconda2/envs/py3.6/lib/python3.6/site-packages/sonicparanoid對mmseqs2進行編譯pip
cd mmseqs2_srcio
cmake -DCMAKE_INSTALL_PREFIX=~/anaconda2/envs/py3.6/lib/python3.6/site-packages/sonicparanoid/mmseqs2_src-build ..
make -j 10
make install
cd ../bin
ln -s ../mmseqs2_src-build/bin/mmseqs .
完成安裝~~